Please let us know if you use our data for a paper of your own -- we'll post it here!

• Beck, D.A.C., Jonsson, A.L., Schaeffer, R.D., Scott, K.A., Day, R., Toofanny, R.D., Alonso, D.O.V., and V. Daggett. Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations. Protein Engineering Design & Selection, 21: 353-368, 2008. [DOI]
• Simms, A.M., Toofanny, R.D., Kehl, C., Benson, N.C., and V. Daggett. Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations. Protein Engineering Design & Selection, 21: 369-377, 2008. [DOI]
• Kehl, C., Simms, A.M., Toofanny, R.D., and Daggett, V., A. Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data. Protein Engineering Design & Selection, 2008 21: 379-386, 2008. [DOI]
• Scott, K.A., Alonso, D.O.V., Sato, S., Fersht, A.R. and V. Daggett, Conformational Entropy of Alanine versus Glycine in Protein Denatured States. Proceedings of the National Academy of Sciences USA. 2007, 104:2661-2666. [DOI]
• Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis Gelpí, and Modesto Orozco. A consensus view of protein dynamics. PNAS 2007 104: 796-801.
• Proteins in Motion by John Hules from the National Energy Research Scientific Computing Center 2005 Annual Report: Research News. [Article]
• Unraveling Protein Folding by Melissa Lee Phillips from The Scientist (April 11, 2005). [PDF]
• Day, R., Beck D. A. C., Armen R. S., Daggett V., A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary. Protein Science, 2003. 12(10): p. 2150-2160. [Abstract]