Help
Contact Information
Contact us at dynameomics_info@uw.edu
Using the Dynameomics.org Website
- Viewing Movies
Movies are formatted as .mov files and require that you have a viewer such as
QuickTime installed.
- Using the Analysis Tools
In order to use our Analysis Tools in the Target List section of Dynameomics.org,
you will need to have a current version of
Java running on your local machine. Note that loading java and individual
protein structures can be slow.
Requesting Database Access
- SQL Account
If you are interested in accessing the data on this site directly within our database, you can request a login. Please download
the form, complete it, and return it via fax or scan it and email it to dynameomics_info@uw.edu.
Download Request Form Here
Citing Dynameomics
If you use Dynameomics data or metadata in a publication, please cite at least one of the following as appropriate.
If you use dynameomics.org for teaching or other outreach purposes, please cite
our webpage, or at least one of the following as appropriate:
General References for Dynameomics:
- Van der Kamp MW, Schaeffer RD, Jonsson AL, Scouras AD, Simms AM, Toofanny RD,
Benson NC, Anderson PC, Merkley ED, Rysavy S, Bromley D, Beck DAC, and Daggett V.,
Dynameomics: A comprehensive database of protein dynamics. Structure, 18:423-435, 2010.
[DOI]
- Beck, D. A. C., Jonsson, A. L., Schaeffer, R. D., Scott, K. A., Day, R., Toofanny, R. D., Alonso, D. O.
V., Daggett V., Dynameomics: Mass Annotation of Protein Dynamics by All-Atom Molecular
Dynamics Simulations. Protein Engineering Design & Selection. 21:353-368, 2008.
[DOI]
Reference for Database:
- Simms, A. M., Toofanny, R. D., Kehl, C., Daggett, V., Dynameomics: Design of a Computational Lab Workflow and Scientific Data Repository.
Protein Engineering Design & Selection, 21: 369-377, 2008.
[DOI]
Reference for Consensus Domain Dictionary:
- Schaeffer R.D, Jonsson A.L., Simms A.M., and Daggett V. Generation of a Consensus Protein Domain
Dictionary. Bioinformatics 27:46-54, 2011.
[DOI]