Dynameomics - Release Set Mapping

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Release Set Mapping

CDD Rank	Fold Name	Release Rank	PDB	Fold Representative
1	Immunoglobulin-like beta-sandwich	1	1wit	Twitchin 18th igsf module
2	Flavodoxin-like	2	3chy	Chemotaxis Protein Y (CheY)
3	TIM beta/alpha-barrel	3	1ypi	Monomer of Triosephosphate isomerase
4	Ferredoxin-like	4	1ris	Ribosomal protein S6
5	DNA/RNA-binding 3-helical bundle	5	1enh	Engrailed homeodomain
6	SH3-like barrel	6	1shf	Fyn tyrosine kinase SH3 domain
7	Concanavalin A-like lectins/glucanases	7	1sac	Monomer of Serum amyloid p component
8	beta-Grasp (ubiquitin-like)	8	1ubq	Ubiquitin
9	OB-fold	9	1mjc	Major cold shock protein 7.4
10	Thioredoxin fold	10	1okt	Glutathione S-transferase
11	EF Hand-like	11	4icb	Calbindin
12	Globin-like	12	1a6n	Myoglobin
13	Trypsin-like serine proteases	13	1arb	Achromobacter Protease I
14	alpha/beta-Hydrolases	14	3tgl	Triacyl-glycerol acylhydrolase
15	Aspartate Aminotransferase; domain 2	15	1uu2	Histidinol-phosphate aminotransferase
16	Spectrin repeat-like	16	1cun	Alpha spectrin
17	Ribonuclease H-like motif	17	1ril	Ribonuclease H
18	Nucleoplasmin-like/VP (viral coat and capsid proteins)	18	1gff	Bacteriophage g4 capsid protein gpf
19	Four-helical up-and-down bundle	19	1was	Chemotaxis receptor
20	Double-stranded beta-helix	20	1ep0	Monomer of DTDP-6-deoxy-d-xylo-4-hexulose 3,5 epimerase
21	Phosphorylase/hydrolase-like	21	2pth	Peptidyl-tRNA hydrolase
22	PDZ domain-like	22	1qau	Neuronal nitric oxide synthase
23	FAD/NAD(P)-binding domain	23	1ebd	Domain of dihydrolipoamide dehydrogenase
24	S-adenosyl-L-methionine-dependent methyltransferases	24	1vid	Catechol O-Methyltransferase
25	beta-Trefoil	25	4wbc	Winged bean chymotrypsin inhibitor
26	PH domain-like barrel	26	1dyn	Dynamin Pleckstrin Homology Domain
27	Protein kinase-like (PK-like)	27	1jam	Casein kinase II, alpha chain
28	C-type lectin-like	28	2go0	Human pancreatitis-associated protein
29	Cytochrome c	29	2giw	Horse heart cytochrome C
30	MHC antigen-recognition domain	30	1tmc	Domain of truncated human class I histocompatibility antigen
31	Lipocalins	31	1ifc	Intestinal fatty acid binding protein
32	Ntn hydrolase-like	32	1pma	Proteasome
33	Knottins (small inhibitors, toxins, lectins)	33	1snb	Neurotoxin BMK M8
34	D-Maltodextrin-Binding Protein; domain 2	34	1bp5	Domain of serum transferrin
35	Reductase/isomerase/elongation factor common domain	35	1d1n	C2 terminal domain of initiation factor 2
36	alpha-alpha superhelix	36	1hh8	Neutrophil cytosol factor 2
37	Adenine nucleotide alpha hydrolase-like	37	1bs2	Yeast arginyl-trna synthase
38	SAM domain-like	38	1cok	C-terminal domain of the second splice variant P73
39	Knottins (small inhibitors, toxins, lectins)	39	1ixa	EGF-like module of human factor IX
40	Phospholipase A2, PLA2	40	1vap	Phospholipase A2
41	Ferritin-like	41	1ier	Horse-spleen apoferritin
42	Bacillus chorismate mutase-like	42	1jd1	YEO7-Yeast
43	Peroxidase; domain 2	43	1dj1	Cytochrome C Peroxidase
44	Profilin-like	44	1ypr	Profilin
45	Aspartate Aminotransferase, domain 1	-
46	Light-harvesting complex subunits	-
47	Thiamin diphosphate-binding fold (THDP-binding)	45	1bfd	Benzylformate decarboxylase
48	Cystatin-like	46	1eqk	Oryzacystatin-I
49	Rossmann fold	-
50	FwdE/GAPDH domain-like	47	1gad	Domain of glyceraldehyde-3-phosphate dehydrogenase
51	Nuclear receptor ligand-binding domain	48	1lbd	Retinoid x receptor
52	4-helical cytokines	49	1hgu	Human growth hormone
53	SH2-like	50	1ab2	C-abl tyrosine kinase sh2 domain
54	alpha/alpha toroid	51	1qaz	Alginate Lyase A1-III
55	ClpP/crotonase	-
56	Zincin-like	52	1iad	Astacin
57	Acyl-CoA N-acyltransferases (Nat)	53	1b6b	Arylalkylamine N-acetyltransferase
58	FKBP-like	54	1fkb	FK506 binding protein
59	Snake toxin-like	55	1ntn	Neurotoxin-I
60	Lysozyme-like	56	1b5u	Lysozyme
61	Phosphorylase Kinase; domain 1	-
62	IL8-like	57	1nr2	Thymus and activation-regulated chemokine
63	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	58	1byl	Bleomycin resistance protein
64	HAD-like	59	1l8l	Phosphoserine phosphatase
65	7-bladed beta-propeller	60	2trc	Chain B of Transducin beta-gamma complex
66	Nucleotide-diphospho-sugar transferases	61	1fzw	Monomer of glucose-1-phosphate thymidylyltransferase
67	Annexin	62	1bo9	Annexin I
68	Single-stranded right-handed beta-helix	63	1ezg	Thermal hysterisis protein isoform yI-1
69	(Phosphotyrosine protein) phosphatases II	64	2hnp	Protein-tyrosine phosphatase 1B
70	Glutathione S-transferase (GST), C-terminal domain	65	1ev4	Glutathione S-transferase
71	Histone-fold	66	1r4v	Hypothetical Protein AQ_328
72	Peroxidase; domain 1	-
73	beta-lactamase/transpeptidase-like	67	1bsg	BETA LACTAMASE
74	Knottins (small inhibitors, toxins, lectins)	68	1p9g	EAFP2 Antifungal Protein
75	Ribosomal protein S5 domain 2-like	69	1d6t	Ribonuclease P
76	PLP-dependent transferases	-
77	IF3-like	70	1p88	3-phosphoshikimate 1-carboxyvinyltransferase
78	GroES-like	-
79	Ribokinase-like	71	1esj	Hydroxyethylthiazole kinase C198S
80	Cysteine proteinases	72	1cvz	Papain
81	LDH C-terminal domain-like	73	1ceq	Domain of L-lactate dehydrogenase
82	Gelsolin-like	74	1d0n	Horse plasma gelsolin
83	Class II aaRS and biotin synthetases	75	11as	Domain of asparagine synthetase
84	Thioesterase/thiol ester dehydrase-isomerase	76	1j1y	Paal protein
85	TATA-Binding Protein	-
86	C2H2 and C2HC zinc fingers	77	2adr	Domain of Adr1 DBD from S. cerevisiae
87	Complement control module/SCR domain	78	1hcc	16th complement control protein of factor H
88	D-Maltodextrin-Binding Protein; domain 2	79	1p99	Hypothetical protein PG110
89	RuvA C-terminal domain-like	80	1cuk	Domain of DNA recombination protein ruva
90	Rossmann fold	81	1wq4	Tyrosyl-tRNA synthetase (TyrRS)
91	UBC-like	82	1u9a	Ubiquitin-conjugating enzyme
92	D-Maltodextrin-Binding Protein; domain 2	83	2lao	Lysine, arginine, ornithine-binding protein
93	gamma-Crystallin-like	84	1elp	Gamma-d crystallin
94	BPTI-like	85	1bf0	Calcicludine
95	lambda repressor-like DNA-binding domains	86	1uxc	Fructose repressor DNA-binding domain
96	Rossmann fold	87	1php	Domain of 3-phosphoglycerate kinase
97	CO dehydrogenase flavoprotein C-domain-like	88	3grs	Domain of glutathione reductase
98	Cytochrome P450	89	1ehe	Cytochrome P450nor
99	6-bladed beta-propeller	90	1f8d	Neuraminidase
100	Thiolase-like	-
101	CH domain-like	91	1bhd	Calponin homology domain from utrophin
102	Ferredoxin reductase-like, C-terminal NADP-linked domain	92	1ddg	Sir-FP60
103	Metallo-dependent phosphatases	93	1g5b	Bacteriophage lambda Serine/Threonine protein phosphatase
104	Cystine-knot cytokines	94	2tgi	Domain of transforming growth factor-beta 2 (TGF-B2)
105	Ribosome inactivating proteins (RIP)	95	1d8v	Anti-HIV and anti-tumor protein Map30
106	Enolase N-terminal domain-like	96	1bqg	D-Glucarate dehydratase
107	Split barrel-like	97	1axj	FMN-binding protein
108	RNase A-like	98	1agi	Angiogenin
109	Glucocorticoid receptor-like (DNA-binding domain)	-
110	LuxS/MPP-like metallohydrolase	-
111	beta-hairpin-alpha-hairpin repeat	99	1ihb	Cyclin-dependent kinase 6 inhibitor
112	Phosphoglycerate mutase-like	100	1fzt	Phosphoglycerate mutase
113	Supersandwich	101	1dp0	Beta domain from chain A of beta-galactosidase
114	Aldehyde Dehydrogenase; Chain A, domain 2	-
115	Cyclophilin-like	102	1dyw	Cyclophilin 3
116	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	103	1ah6	Heat shock protein 90 N-terminal domain
117	TBP-like	104	1e09	Major cherry allergen PRU AV 1
118	Metallo-hydrolase/oxidoreductase	105	1dxk	Class B beta-lactamase
119	Transmembrane beta-barrels	-
120	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	106	1d0b	Internalin B Leucine Rich Repeat Domain
121	Nudix	107	1mut	Nucleoside triphosphate pyrophosphohydrolase
122	Subtilisin-like	108	1ah2	Serine protease PB92
123	Cyclin-like	109	1tfb	Domain of transcription factor IIb
124	TBP-like	110	3pmg	Phoshpoglucomutase
125	Single-stranded left-handed beta-helix	111	1n4i	Spruce budworm antifreeze protein
126	DHS-like NAD/FAD-binding domain	112	1pno	NAD(P) transhydrogenase subunit beta
127	alpha/beta knot	113	1o6d	Hypothetical UPF0247 protein TM0844
128	IF3-like	114	2ife	Translation Initiation Factor IF3
129	Pyruvoyl-Dependent Histidine Decarboxylase; Chain B	-
130	D-amino Acid Aminotransferase; Chain A, domain 1	-
131	serine acetyltransferase, domain 1	-
132	Prion-like	115	1b10	Hamster prion protein
133	DEATH domain	116	1fad	Death domain of FAS-associated death domain protein
134	Barrel-sandwich hybrid	117	1iyu	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
135	Kazal-type serine protease inhibitors	118	1hpt	Pancreatic secretory trypsin inhibitor variant 3
136	Isocitrate/Isopropylmalate dehydrogenase-like	119	1xab	3-isopropylmalate dehydrogenase
137	PreATP-grasp domain	120	2glt	Domain of glutathione biosynthetic ligase
138	Bromodomain-like	121	1r3b	Mob1
139	Anticodon-binding domain-like	122	1evl	Domain of Threonyl-tRNA synthetase fragment
140	Acyl carrier protein-like	123	1unk	Colicin E7
141	POZ domain	124	1dsx	KV1.2 T1 Domain T46V mutant
142	Rhodanese/Cell cycle control phosphatase	125	1c25	CDC25A catalytic domain
143	Rossmann fold	126	2pgi	Phosphoglucose isomerase
144	Alpha-lytic protease prodomain-like	127	3pro	N-terminal domain of alpha-lytic protease
145	FYVE/PHD zinc finger	-
146	Cytidine deaminase-like	128	1wwr	tRNA adenosine deaminase TadA
147	Alpha-Beta Plaits	129	1e6y	Domain of the methyl-coenzyme M reductase I beta subunit
148	alpha-alpha superhelix	-
149	alpha/beta-Hammerhead	130	1wki	LSU ribsomal protein L16P
150	Rubredoxin-like	131	1qcv	Rubredoxin variant pfrd-xc4 (apo)
151	Alkaline phosphatase-like	-
152	Double psi beta-barrel	132	1bw3	Barwin
153	Multiheme cytochromes	-
154	immunoglobulin/albumin-binding domain-like	133	1edi	E-domain of staphylocococcal protein A
155	Aldehyde Dehydrogenase; Chain A, domain 1	-
156	Cytochrome b5-like heme/steroid binding domain	134	1t0g	Cytochrome b5 domain-containing protein
157	Kringle-like	135	5hpg	Monomer of Kringle 5 domain of human plasminogen
158	Heme oxygenase-like	136	1dvg	Heme oxygenase-1
159	Acid proteases	137	1g6l	HIV-1 protease
160	Eukaryotic type KH-domain (KH-domain type I)	138	1we8	Tudor and KH domain containing protein
161	RING/U-box	139	1n87	Pre-mRNA splicing factor PRP19
162	Knottins (small inhibitors, toxins, lectins)	140	1iva	Omega-agatoxin-Iva
163	6-phosphogluconate dehydrogenase C-terminal domain-like	141	1f17	L-3-hydroxyacyl-CoA dehydrogenase
164	Fructose-1,6-Bisphosphatase; Chain A, domain 1	-
165	Dihydrofolate reductase-like	142	1ai9	Monomer of dihydrofolate reductase
166	SMAD/FHA domain	143	1fhq	Protein kinase spk1
167	HMG-box	144	1i11	Transcription factor sox-5
168	The "swivelling" beta/beta/alpha domain	145	1q5x	Regulator of RNase E activity A (RraA)
169	Aminoacid dehydrogenase-like, N-terminal domain	146	1p74	Shikimate 5-dehydrogenase
170	dsRBD-like	147	1o0w	Ribonuclease III domain
171	Beta-Lactamase	-
172	Cathepsin D, subunit A; domain 1	-
173	Homing endonuclease-like	-
174	vWA-like	148	1mf7	Integrin alpha M
175	Microbial ribonucleases	149	1a2p	Barnase
176	NagB/RpiA/CoA transferase-like	150	1cd5	Glucosamine 6-phosphate Deaminase
177	DCoH-like	151	1dco	Dimerization cofactor of hepatocyte nuclear factor 1-alpha
178	Domain of alpha and beta subunits of F1 ATP synthase-like	152	1e1q	Bovine mitochondrial f1-ATPase
179	Rossmann fold	-
180	D-Maltodextrin-Binding Protein; domain 2	153	1imf	Domain from inositol monophosphatase
181	Urate Oxidase	-
182	Fumarase C; Chain A, domain 2	-
183	Streptavidin-like	154	1swb	Streptavidin monomer
184	GMP Synthetase; Chain A, domain 3	-
185	Rubredoxin-like	-
186	Kringle-like	155	1cxw	Matrix metalloproteinase 2
187	Glutamine synthetase/guanido kinase	156	1qh4	Creatine kinase
188	Restriction endonuclease-like	157	1j22	Hef
189	beta-Prism II	158	1b2p	Monomer of lectin
190	Photosynthetic Reaction Center, subunit M; domain 1	-
191	Citrate Synthase; domain 1	-
192	Peptide deformylase	159	1lmh	Type II peptide deformylase from Staphylococcus aureus
193	Composite domain of metallo-dependent hydrolases	-
194	8-bladed beta-propeller	-
195	HLH-like	-
196	TK C-terminal domain-like	160	1dtw	Branched-chain alpha-keto acid dehydrogenase beta subunit
197	GFP-like	-
198	Pentein, beta/alpha-propeller	161	1g61	Translation initiation factor 6
199	Ribbon-helix-helix	-
200	LDL receptor-like module	162	1ldl	LDL receptor ligand-binding domain
201	Secretion chaperone-like	-
202	Inhibitor of apoptosis (IAP) repeat	-
203	Lipase/lipooxygenase domain (PLAT/LH2 domain)	163	1hpl	Domain from lipase
204	Periplasmic binding protein-like II	164	1i6a	OxyR transcription factor
205	Proliferating Cell Nuclear Antigen	-
206	Rossmann fold	-
207	Rossmann fold	-
208	Wheat Germ Agglutinin (Isolectin 2); domain 1	-
209	Cytochrome p450-Terp; domain 2	-
210	Endonuclease Iii, domain 2	-
211	Hypothetical Oxidoreductase Yiak; Chain: A, domain 1	-
212	BRCT domain	165	1cdz	DNA Repair Protein XRCC1
213	Carbonic anhydrase	166	1fqn	Carbonic anhydrase
214	Thymidylate synthase/dCMP hydroxymethylase	167	1bkp	Monomer of Thymidylate synthase A
215	P-loop containing nucleoside triphosphate hydrolases	168	1bg2	Kinesin motor domain
216	beta-clip	169	1tul	Tlp20
217	Terpenoid synthases	170	1v4e	Octoprenyl-diphosphate synthase
218	Toxins' membrane translocation domains	171	1g5m	BCL-2 with flexible loop replaced by a portion of BCL-X
219	RuBisCO, small subunit	172	3rub	Domain of Ribulose 1
220	Phospholipase D/nuclease	173	1byr	Phospholipase D family member
221	The "swivelling" beta/beta/alpha domain	174	1srv	GroEL fragment
222	ISP domain	-
223	Acid phosphatase/Vanadium-dependent haloperoxidase	-
224	Molybdenum cofactor biosynthesis proteins	175	1ihc	Gephyrin N-terminal Domain
225	Restriction endonuclease-like	176	1gef	Holliday junction resolvase monomer
226	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	177	1bea	Bifunctional amylase/serine protease inhibitor
227	Putative DNA-binding domain	178	1qpm	Mu Bacteriophage C Repressor Protein
228	Crambin-like	179	1crn	Crambin
229	Serpins	180	1qlp	Alpha-1-antitrypsin
230	Heme-dependent peroxidases	181	1oag	Ascorbate Peroxidase
231	L-aspartase-like	-
232	Rhinovirus 14, subunit 4	-
233	Rossmann fold	-
234	Dehydroquinate synthase-like, alpha domain	182	1jpu	Glycerol dehydrogenase
235	Helicase, Ruva Protein; domain 3	183	1d2n	N-ethylmaleimide-sensitive fusion protein
236	Penicillin Amidohydrolase; domain 1	-
237	Heme-dependent catalase-like	184	1u5u	Allene oxide synthase-lipoxygenase
238	Tautomerase/MIF	185	1dpt	D-dopachrome tautomerase
239	Knottins (small inhibitors, toxins, lectins)	186	1c2a	Bowman-Birk trypsin inhibitor
240	DNase I-like	187	1ako	Exonuclease III from E.coli
241	Arginase/deacetylase	188	1c3p	Histone deacetylase-like protein
242	Acyl-CoA binding protein-like	189	1gc7	Domain from radixin
243	5-bladed beta-propeller	190	1tl2	Tachylectin-2
244	DNA polymerase III clamp loader subunits, C-terminal domain	-
245	Tetracyclin repressor-like, C-terminal domain	191	1t56	EthR repressor
246	Caspase-like	192	1cvr	Gingipain R
247	Creatinase/aminopeptidase	193	4mat	Methionine aminopeptidase H79A
248	Uracil-DNA glycosylase-like	194	1akz	Uracil DNA glycosylase
249	WW domain-like	195	1e0l	WW-domain
250	Domain of alpha and beta subunits of F1 ATP synthase-like	-
251	LEM/SAP HeH motif	196	1h9f	Thymopoietin
252	Blood coagulation inhibitor (disintegrin)	197	1fvl	Flavoridin
253	SH3-like barrel	198	1sso	Sso7d
254	Diaminopimelate epimerase-like	-
255	ATP-grasp	199	1xdn	RNA editing ligase MP52
256	Ribonuclease Rh-like	200	1bol	Ribonuclease RH
257	Acid proteases	201	1sgz	Beta-Secretase Catalytic Domain
258	Regulator of G-protein signaling, RGS	202	1cmz	G-alpha interacting rgs box
259	D-Maltodextrin-Binding Protein; domain 2	-
260	Dna Ligase; domain 1	203	1gso	Glycinamide ribonucleotide synthetase
261	Thrombin, subunit H	-
262	Serum Albumin; Chain A, Domain 1	204	1bm0	Domain from human serum albumin
263	Tyrosyl-Transfer RNA Synthetase	205	1tya	Tyrosyl-tRNA Synthetase
264	Phosphoglucomutase, first 3 domains	206	1k2y	Phosphomannomutase S108A
265	Retrovirus capsid protein, N-terminal core domain	207	1g03	HTLV-1 Capsid Protein
266	HIPIP (high potential iron protein)	-
267	Family A G protein-coupled receptor-like	-
268	ADP-ribosylation	208	1g24	Exoenzyme C3
269	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	209	1m6b	Receptor protein-tyrosine kinase erbB-3
270	beta-Prism I	210	1vmo	Vitelline membrane outer layer protein I
271	DBL homology domain (DH-domain)	211	1by1	PIX
272	Defensin-like	212	1fd3	Human beta-defensin 2
273	Anticodon-binding domain-like	213	1b78	Chain A from Pyrophosphatase
274	Viral protein domain	-
275	Guanido kinase N-terminal domain	214	1qh4	Domain of creatine kinase
276	Defensin-like	215	1b8w	Defensin-like peptide 1
277	HPr-like	216	1ka5	Phosphocarrier Protein HPR
278	Alpha-L RNA-binding motif	217	1jh3	Tyrosyl-tRNA Synthetase
279	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	218	1chu	Domain of L-aspartate oxidase
280	HSP20-like chaperones	219	1ejf	Progesterone receptor P23
281	Retroviral matrix proteins	220	1a6s	M-domain from GAG polyprotein
282	DNA/RNA polymerases	-
283	FAH	-
284	Nitric oxide (NO) synthase oxygenase domain	-
285	Tryptophan synthase beta subunit-like PLP-dependent enzymes	-
286	Lumazine synthase	-
287	D-Maltodextrin-Binding Protein; domain 2	-
288	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	221	1wde	Probable diphthine synthase
289	GMP Synthetase; Chain A, domain 3	222	1ba3	Domain from luciferase
290	Butyryl-CoA Dehydrogenase, subunit A; domain 2	-
291	Molybdopterin biosynthesis moeA protein; domain 3	223	1wu2	Molybdopterin biosynthesis moeA protein
292	Arf Nucleotide-binding Site Opener; domain 2	-
293	inorganic pyrophosphatase (n-terminal core)	-
294	Chelatase-like	224	1tjn	Sirohydrochlorin Cobaltochelatase
295	DNA breaking-rejoining enzymes	-
296	MurD-like peptide ligases, peptide-binding domain	225	1gqy	UDP-n-acetylmuramate-l-alanine ligase
297	4-bladed beta-propeller	226	1itv	MMP9
298	CO dehydrogenase ISP C-domain like	-
299	FMN-dependent nitroreductase-like	-
300	GroEL-intermediate domain like	-
301	YrdC/RibB	227	1kk9	Probable translation factor yciO
302	beta-clip	228	1ops	Type III antifreeze protein
303	IHF-like DNA-binding proteins	-
304	GroEL equatorial domain-like	-
305	DNA-glycosylase	229	1ngn	Methyl-CpG binding protein MBD4
306	FnI-like domain	230	1tpg	Domain of T-plasminogen activator F1-G
307	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	231	1otp	Thymidine phosphorylase
308	Cytochrome Bc1 Complex; Chain C	-
309	Nucleotidyltransferase	232	1no5	Hypothetical protein HI0073
310	HIT-like	233	6rhn	Histidine triad nucleotide-binding protein
311	NagB/RpiA/CoA transferase-like	-
312	PUA domain-like	234	1s04	Hypothetical Protein PF0455
313	Knottins (small inhibitors, toxins, lectins)	-
314	TNF receptor-like	-
315	Fibrinogen C-terminal domain-like	235	1fid	Gamma fibronogen
316	DNA clamp	-
317	Isochorismatase-like hydrolases	236	1ilw	Pyrazinamidase/nictotinamidase
318	Hedgehog/intein (Hint) domain	237	1at0	17-Hedgehog
319	Herpes virus serine proteinase, assemblin	-
320	OB-fold	238	1igp	Inorganic pyrophosphatase
321	Bromodomain-like	239	1f68	Histone acetyl transferase
322	HD-domain/PDEase-like	-
323	DNA primase DNAg catalytic core, N-terminal domain	240	1dde	DNA primase
324	Rossmann fold	-
325	Rossmann fold	241	4pga	Domain of glutaminase-asparaginase
326	Rossmann fold	242	1mop	Pantothenate synthase
327	Cobalt-precorrin-4 Transmethylase; domain 1	243	1wde	Probable diphthine synthase
328	Guanylate Kinase phosphate binding domain	244	1ex6	Guanylate kinase
329	Aldehyde Oxidoreductase; domain 4	-
330	Beta Polymerase; domain 3	245	1bpx	DNA polymerase beta
331	Pantoate--beta-alanine Ligase; Chain: A,domain 2	246	1n2j	Pantothenate synthetase
332	D-amino Acid Aminotransferase; Chain A, domain 2	-
333	N-terminal domain of TfIIb	-
334	Cysteine Rich Protein	-
335	Fumarase C; Chain A, domain 2	247	1fuo	Fumarase C
336	Butyryl-Coa Dehydrogenase, subunit A; domain 1	-
337	Ribonucleotide Reductase Protein R1; domain 1	248	2fus	Domain of fumarase c
338	Topoisomerase I; Chain A, domain 4	-
339	CI-2 family of serine protease inhibitors	249	1egl	Eglin C
340	Carbamate kinase-like	250	1z9d	Uridylate kinase
341	Plant proteinase inhibitors	-
342	T-fold	251	1dhn	7,8-Dihydroneopterin aldolase
343	PX domain	252	1gd5	Neutrophil cytosol factor 1
344	Tubulin nucleotide-binding domain-like	253	1fsz	FTSZ
345	Methylglyoxal synthase-like	-
346	PK beta-barrel domain-like	254	1pkl	Domain of pyruvate kinase
347	Hyaluronate lyase-like, C-terminal domain	255	1rwc	Chondroitin AC lyase
348	Virus attachment protein globular domain	256	1knb	Receptor-binding domain of adenovirus type 5 fiber protein
349	PEBP-like	257	1fux	E. coli Ybcl
350	Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	-
351	Transducin (alpha subunit), insertion domain	258	1cip	Guanine nucleotide-binding protein alpha-1 subunit
352	SWIB/MDM2 domain	259	1ycq	MDM2
353	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	-
354	AN1-like Zinc finger	-
355	Insulin-like	260	1tgr	Mini-IGF-1(2)
356	MoCo carrier protein-like	261	1wek	Hypothetical protein TT1465
357	Prealbumin-like	262	1eo9	Monomer of protocatechuate 3,4-dioxygenase
358	Nucleoplasmin-like/VP (viral coat and capsid proteins)	-
359	Dna Ligase; domain 1	-
360	SufE/NifU	263	1mzg	SufE Protein
361	Restriction endonuclease-like	-
362	Mss4-like	264	1l1d	Peptide methionine sulfoxide reductase
363	Left-handed superhelix	265	1h8h	Bovine Mitochondrial F1-ATPase
364	Acetyl-CoA synthetase-like	-
365	Pseudouridine synthase	266	1ksv	Ribosomal small subunit pseudouridine synthase A
366	P-loop containing nucleoside triphosphate hydrolases	-
367	Transcription factor IIA (TFIIA), beta-barrel domain	-
368	KaiA/RbsU domain	267	1v2z	Cricadian clock protein KaiA homolog
369	DNA Methylase; Chain A, domain 2	-
370	Rossmann fold	-
371	Rossmann fold	-
372	Rossmann fold	268	1jr2	Uroporphyrinogen III synthase
373	Rossmann fold	269	1ys9	Protein SPy1043
374	D-amino Acid Aminotransferase; Chain A, domain 1	270	1a0g	D-amino acid aminotransferase
375	Phosphorylase Kinase; domain 1	-
376	Dna Ligase; domain 1	-
377	Ribosomal Protein S8; Chain: A, domain 1	-
378	Gyrase A; domain 2	271	1dd5	Domain from ribosome recycling factor (rrf)
379	Elastase; domain 1	-
380	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	-
381	DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3	-
382	Topoisomerase I; Chain A, domain 4	-
383	Cytochrome c oxidase subunit I-like	-
384	Aquaporin-like	-
385	HydB/Nqo4-like	-
386	Zincin-like	272	1h41	Alpha-glucuronidase
387	CNF1/YfiH-like putative cysteine hydrolases	273	1rv9	Conserved Hypothetical Protein NMB0706
388	Macro domain-like	274	1hjz	Hypothetical Protein AF1521
389	Mannose 6-phosphate receptor domain	275	1keo	Cation-dependent mannose-6-phosphate receptor
390	Ferritin-like	276	1nog	Hypothetical protein TA0546
391	Non-globular all-alpha subunits of globular proteins	-
392	Phospholipase C/P1 nuclease	-
393	PEP carboxykinase-like	-
394	Globin-like	-
395	RNA bacteriophage capsid protein	-
396	Cdc48 domain 2-like	277	1cz4	Fragment of the N-terminal domain of VCP-like ATPase
397	Insert subdomain of RNA polymerase alpha subunit	-
398	PFL-like glycyl radical enzymes	-
399	Formyltransferase	278	3gar	Glycinamide Ribonucleotide Transformylase
400	Ribonuclease H-like motif	279	1jaw	Domain from aminopeptidase p
401	Resolvase-like	-
402	Pyruvate kinase C-terminal domain-like	280	1pky	Pyruvate kinase
403	Di-copper centre-containing domain	-
404	Methionine synthase domain-like	-
405	Protozoan pheromone-like	281	1erd	Pheromone ER-2
406	Cysteine-rich domain	-
407	Retrovirus zinc finger-like domains	-
408	Origin of replication-binding domain, RBD-like	282	1l5i	Rep Protein
409	Hedgehog/DD-peptidase	283	1vhh	Sonic hedgehog
410	Aromatic aminoacid monoxygenases, catalytic and oligomerization domains	284	1ltu	Phenylalanine-4-hydroxylase
411	ADP-ribosylation	285	1sgk	Alpha-beta domain from diptheria toxin
412	N-acetylmuramoyl-L-alanine amidase-like	286	1s2j	Peptidoglycan recognition protein SA CG11709-PA
413	Nucleotide-binding domain	-
414	TRAF domain-like	287	1lb6	Tnf receptor-associate factor 6
415	ValRS/IleRS/LeuRS editing domain	288	1ile	Domain from isoleucyl-tRNA synthetase
416	NusB-like	289	1ey1	Antitermination Factor NUSB
417	N domain of copper amine oxidase-like	290	1ew4	CYAY Protein
418	CoA-dependent acyltransferases	291	1dpb	Dihydrolipoyl transacetylase catalytic domain
419	Knottins (small inhibitors, toxins, lectins)	292	1mm0	Termicin
420	Serine protease inhibitors	293	1eai	Chymotrypsin/elastase isoinhibitor 1
421	Hairpin loop containing domain-like	294	2hgf	Hepatocyte Growth Factor
422	Neurotransmitter-gated ion-channel transmembrane pore	-
423	Tautomerase/MIF	-
424	Ferredoxin-like	295	1fva	Methionine sulfoxide reductase
425	Anti-LPS factor/recA domain	296	1aa3	C-terminal domain of E.coli RecA
426	SAND domain-like	297	1h5p	Nuclear autoantigen SP100-B
427	ADC synthase	-
428	Carbon-nitrogen hydrolase	-
429	Ribosomal protein L6	298	1rl6	Ribosomal Protein L6
430	AraD-like aldolase/epimerase	299	1pvt	Sugar-phosphate aldolase
431	Ribonuclease H-like motif	300	1i39	Ribonuclease HII
432	CoA-dependent acyltransferases	-
433	HSP40/DnaJ peptide-binding domain	301	1c3g	Heat shock protein 40
434	Rof/RNase P subunit-like	302	1tsf	Ribonuclease P protein component 1
435	N-terminal domain of MutM-like DNA repair proteins	303	1r2z	MutM
436	Multiheme cytochromes	-
437	Citrate synthase	304	1iom	Citrate Synthase
438	Topoisomerase I; Chain A, domain 3	-
439	Hypothetical Protein Ta0175; Chain: A, domain 2	305	1wr8	Phosphoglycolate phosphatase
440	Rossmann fold	-
441	Rossmann fold	-
442	Rossmann fold	306	1epu	Domain from s-sec1
443	Antithrombin; Chain I, domain 2	-
444	Beta Polymerase; domain 2	-
445	ornithine cyclodeaminase, domain 1	-
446	Dna Ligase; domain 1	-
447	Beta-galactosidase; Chain A, domain 5	-
448	Noncollagenous (NC1) domain of collagen IV	-
449	DNA Topoisomerase I; domain 2	-
450	Malate Synthase G; Chain: A; Domain 4	307	1y8b	Domain of malate synthase
451	Lysozyme	-
452	PCRA; domain 4	-
453	Fumarase C; Chain B, domain 1	-
454	Fumarase C; Chain B, domain 1	308	1fuo	Fumarase C
455	Recoverin; domain 1	-
456	main proteinase (3clpro) structure, domain 3	309	1uk3	3C-like proteinase
457	Leukocidin-like	310	2lkf	Leukocidin F subunit
458	Toxins' membrane translocation domains	311	1ciy	CryIA(a) insecticidal toxin
459	Cell cycle regulatory proteins	312	1buh	CKSHS1
460	Cysteine proteinases	-
461	YjbQ-like	313	1vmf	Not set
462	Lesion bypass DNA polymerase (Y-family), little finger domain	314	1unn	DNA polymerase III beta subunit
463	Metal cation-transporting ATPase, ATP-binding domain N	315	1svj	Potassium-transporting ATPase B Chain
464	TBP-like	-
465	YbaK/ProRS associated domain	-
466	Nucleoside hydrolase	-
467	SpoIIaa-like	316	1auz	SpoIIA
468	MTH938-like	317	1ihn	Hypothetical protein MTH938
469	beta-clip	318	2fu3	Domain of gephyrin e-domain
470	DNA/RNA-binding 3-helical bundle	319	1ryu	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1
471	Multiheme cytochromes	-
472	Rossmann fold	-
473	GLA-domain	-
474	Knottins (small inhibitors, toxins, lectins)	320	1hic	Hirudin variant
475	Knottins (small inhibitors, toxins, lectins)	321	1bx8	Hirustasin
476	Trefoil/Plexin domain-like	322	1e9t	Human intenstinal trefoil factor
477	Heme-binding four-helical bundle	-
478	T-fold	323	1b6z	6-pyruvoyl tetrahydropterin synthase
479	Zincin-like	324	1t3c	Neurotoxin type E
480	ssDNA-binding transcriptional regulator domain	-
481	PurM C-terminal domain-like	-
482	Phoshotransferase/anion transport protein	325	1a3a	Mannitol-specific EII
483	MurF and HprK N-domain-like	326	1ko7	Hpr kinase/phosphatase
484	DsrEFH-like	327	1rhx	Conserved Hypothetical Protein TM0979
485	Cytolysin/lectin	328	1iaz	Equinatoxin II
486	FMT C-terminal domain-like	329	1fmt	Methionyl-tRNA fmet formyltransferase
487	GroES-like	-
488	Osmotin, thaumatin-like protein	330	1du5	Monomer of zeamatin
489	Nucleoplasmin-like/VP (viral coat and capsid proteins)	-
490	Sortase	331	1ija	Sortase
491	Saposin-like	332	1nkl	NK-lysin
492	Transcription factor IIA (TFIIA), alpha-helical domain	-
493	PABP domain-like	333	1i2t	Hyperplastic discs domain of HYD protein
494	RPB6/omega subunit-like	334	1i50	DNA-directed RNA Polymerase II
495	GTPase activation domain, GAP	335	1tx4	P50-RHOGAP
496	Globin-like	-
497	Pili subunits	336	1dzo	Type IV Pilin
498	Rossmann fold	-
499	N-cbl like	337	1eo0	Domain I of transcription elongation factor S II
500	TAZ domain	-
501	PMP inhibitors	-
502	Zn2/Cys6 DNA-binding domain	-
503	C2H2 and C2HC zinc fingers	-
504	Knottins (small inhibitors, toxins, lectins)	-
505	Knottins (small inhibitors, toxins, lectins)	-
506	Light-harvesting complex subunits	-
507	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	-
508	Bacterial photosystem II reaction centre, L and M subunits	-
509	Transmembrane helix hairpin	-
510	DNA/RNA polymerases	-
511	DNA/RNA polymerases	338	1im4	DinB homolog
512	Carbohydrate phosphatase	339	1lbv	Fructose 1,6-bisphosphatase/inositol monophosphatase
513	Acyl-CoA dehydrogenase NM domain-like	340	1ivh	Isovaleryl-CoA dehydrogenase
514	Zincin-like	-
515	SRF-like	-
516	Ribosomal protein L5	-
517	Ferredoxin-like	-
518	DLC	341	1cmi	Protein inhibitor of neuronal nitric oxide synthase
519	Thioesterase/thiol ester dehydrase-isomerase	342	1vpm	Acyl-CoA hydrolase
520	Bacterial protein-export protein SecB	343	1fx3	Protein export chaperone secB
521	XisI-like	-
522	SRP19	344	1kvn	SRP19
523	beta-Grasp (ubiquitin-like)	345	1wgr	Growth Factor Receptor-bound protein 7
524	Sterol carrier protein, SCP	346	1c44	Sterol Carrier Protein 2
525	Periplasmic binding protein-like I	347	1usg	Leucine-specific binding protein
526	Chelatase-like	348	1k0f	Periplasmic zinc-binding protein troA
527	PEP carboxykinase-like	-
528	Formate dehydrogenase/DMSO reductase, domains 1-3	-
529	Ribose/Galactose isomerase RpiB/AlsB	349	2bes	Ribose-5-phosphate isomerase B
530	DAK1/DegV-like	350	1un8	Dihydroxyacetone kinase
531	PEP carboxykinase N-terminal domain	351	1k3c	Phosphoenolpyruvate carboxykinase
532	Barrel-sandwich hybrid	352	1gpr	IIA domain of glucose permease
533	triple barrel	-
534	Oncogene products	353	1a1x	HMTCP-1
535	EV matrix protein	-
536	Calpain large subunit, middle domain (domain III)	-
537	PUA domain-like	354	1v6z	Hypothetical protein TTHA0657á
538	PUA domain-like	355	1sgv	tRNA pseudouridine synthase B
539	Nucleoplasmin-like/VP (viral coat and capsid proteins)	-
540	Signal peptide-binding domain	-
541	lambda repressor-like DNA-binding domains	356	1d1l	Lambda Cro Repressor
542	all-alpha NTP pyrophosphatases	357	1y6x	Phosphoribosyl-ATP pyrophosphatase
543	YutG-like	358	1tlq	Hypothetical protein ypjQ
544	Fertilization protein	359	2lis	Sperm Lysin
545	Rhinovirus 14, subunit 4	-
546	Cytochrome-c3 Hydrogenase; Chain A, domain 2	-
547	Rossmann fold	360	1jr3	DNA polymerase III subunit gamma
548	Rossmann fold	-
549	Dimethylsulfoxide Reductase; domain 2	-
550	Wheat Germ Agglutinin (Isolectin 2); domain 1	-
551	Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2	361	1rlo	Phosphatase
552	Arylsulfatase, C-terminal domain	-
553	Nuclear Transport Factor 2; Chain: A,	-
554	Nuclear Transport Factor 2; Chain: A,	-
555	Ubiquitin-like (UB roll)	-
556	Hnrnp arginine n-methyltransferase1	-
557	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	-
558	Alpha-1-antitrypsin; domain 1	-
559	Phage FD Coat Protein, Membrane penetration domain	-
560	Spermidine Synthase; Chain: A, domain 2	-
561	Tumor Necrosis Factor Receptor, subunit A; domain 2	362	1tnr	Extracellular domain of tumor necrosis receptor p55
562	Monooxygenase	-
563	Taq DNA Polymerase; Chain T, domain 4	-
564	Helicase, Ruva Protein; domain 3	-
565	Helicase, Ruva Protein; domain 3	363	1ht2	Heat shock locus HSLV
566	Topoisomerase I; domain 2	-
567	Neutral Protease; domain 2	-
568	Endonuclease III; domain 1	-
569	Siro heme synthase C-terminal domain-like	364	1kyq	C-terminal domain of Met8p
570	Bbcrasp-1	-
571	Adenylosuccinate Synthetase, subunit A; domain 2	-
572	Helix Hairpins	365	1b04	DNA ligase
573	Topoisomerase; domain 3	-
574	Tyrosyl-Transfer RNA Synthetase	-
575	L-2-haloacid Dehalogenase; domain 2	366	1rql	Phosphonoacetaldehyde Hydrolase
576	HSP33 redox switch-like	367	1xjh	33 kDa chaperonin
577	SBT domain	368	1wj0	Squamosa promoter-binding protein-like 12
578	eIF4e-like	369	1ap8	Translation factor eIF4E
579	Urease, gamma-subunit	370	1a5m	Alpha-beta domain from urease
580	MutS N-terminal domain-like	-
581	Probable bacterial effector-binding domain	371	1jyh	DNA gyrase inhibitory proteins
582	Cysteine proteinases	372	1xd3	Ubiquitin Carboxyl-terminal esterase L3
583	Cysteine proteinases	373	1euv	C-terminal ULP1 protease domain
584	BtrG-like	374	1xhs	Hypothetical UPF0131 Protein ytfP
585	Folate-binding domain	375	1vly	Unknown protein from 2D-page (Spot PR51) (b2898)
586	Ribosome binding domain-like	376	1p9y	Trigger factor
587	FYSH domain	377	1nyn	Hypothetical 12.0 kDa protein in NAM8-GAR1 intergenic region
588	YbaB-like	-
589	Hsp33 domain	-
590	Oxidoreductase molybdopterin-binding domain	-
591	C-type lectin-like	378	1z52	Aerolysin
592	Nitrile hydratase alpha chain	-
593	Monooxygenase (hydroxylase) regulatory protein	379	2mob	Methane Monooxygenase Regulatory Protein B
594	Ribosomal proteins S24e, L23 and L15e	-
595	PR-1-like	380	1cfe	Pathogenesis-related Protein P14A
596	Subdomain of clathrin and coatomer appendage domain	381	1qts	Domain of Ap-2 clathrin adaptor alpha subunit
597	Amidase signature (AS) enzymes	382	1obl	Malonamidase E2
598	DTD-like	-
599	LexA/Signal peptidase	383	1jhf	LexA G85D Mutant
600	beta-clip	384	1mt6	SET9
601	beta-clip	385	1kra	Urease
602	Ribosomal protein L14	386	1whi	Ribosomal Protein L14
603	Ecotin, trypsin inhibitor	387	1ifg	Ecotin
604	DNA-binding pseudobarrel domain	388	1yel	At1g16640
605	Stringent starvation protein B, SspB	389	1twb	Stringent starvation protein B homolog
606	Nucleoplasmin-like/VP (viral coat and capsid proteins)	390	1gff	Bacteriophage G4
607	FAS1 domain	391	1nyo	Immunogenic protein MPT70
608	P-domain of calnexin/calreticulin	-
609	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	392	1w4h	Dihydrolipollysine-residue acetyltransferase
610	immunoglobulin/albumin-binding domain-like	-
611	Iron-dependent repressor protein, dimerization domain	-
612	Ribosomal protein S7	393	1hus	Ribosomal protein S7
613	Domain of poly(ADP-ribose) polymerase	-
614	BAR/IMD domain-like	394	1uru	Amphiphysin BAR domain
615	PGBD-like	395	1lbu	Muramoyl-pentapeptide carboxypeptidase
616	Another 3-helical bundle	396	1uj8	Hypothetical protein yfhJ
617	AhpD-like	-
618	VHP, Villin headpiece domain	397	1qqv	Villin headpiece domain
619	Non-globular all-alpha subunits of globular proteins	-
620	Chorismate mutase II	-
621	IIA domain of mannose transporter, IIA-Man	398	1pdo	Mannose permease
622	E2 regulatory, transactivation domain	399	1qqh	Papillomavirus transcription factor E2
623	Poly(a)-polymerase, middle domain	-
624	Rubredoxin-like	-
625	RRF/tRNA synthetase additional domain-like	400	1f7u	Arginine-tRNA ligase
626	Ferredoxin-like	-
627	ClpS-like	401	1rqs	50S ribosomal protein L7/L12
628	DNA-binding domain	402	1qk9	Methyl-CPG-Binding Protein 2
629	DNA-binding domain	403	3gcc	Aterf1
630	Ribonuclease H-like motif	404	1mgt	O6-methylguanine-DNA methyltransferase
631	Creatininase	-
632	SH3-like barrel	405	1vyn	Argonaute2
633	Heat shock protein 70kD (HSP70), peptide-binding domain	-
634	Penicillin-binding protein associated domain	406	1hd8	Penicillin-binding protein 5
635	Putative DNA-binding domain	-
636	F-box domain	-
637	Resistin	-
638	TSP-1 type 1 repeat	-
639	PMP inhibitors	-
640	Glucocorticoid receptor-like (DNA-binding domain)	-
641	GLA-domain	-
642	Knottins (small inhibitors, toxins, lectins)	-
643	Knottins (small inhibitors, toxins, lectins)	-
644	Knottins (small inhibitors, toxins, lectins)	-
645	Knottins (small inhibitors, toxins, lectins)	-
646	Knottins (small inhibitors, toxins, lectins)	-
647	Knottins (small inhibitors, toxins, lectins)	-
648	Knottins (small inhibitors, toxins, lectins)	-
649	Knottins (small inhibitors, toxins, lectins)	-
650	Knottins (small inhibitors, toxins, lectins)	-
651	TNF receptor-like	-
652	TB module/8-cys domain	-
653	Methylamine dehydrogenase, L chain	-
654	LDL receptor-like module	-
655	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	-
656	Photosystem I subunits PsaA/PsaB	-
657	Clc chloride channel	-
658	Voltage-gated potassium channels	-
659	Prismane protein-like	-
660	Origin of replication-binding domain, RBD-like	-
661	eIF1-like	407	1d1r	11.4 KD Protein YCIH in PYRF-OSMB intergenic regoin
662	Ferredoxin-like	-
663	Ribosomal protein L22	408	1i4j	50S ribosomal protein L22
664	Alpha-lytic protease prodomain-like	409	1uwd	Hypothetical protein TM0487
665	Ribosomal L11/L12e N-terminal domain	410	1mms	Ribosomal protein L11
666	His-Me finger endonucleases	411	2gyk	Colicin-E9
667	MK0786-like	-
668	AF0104/ALDC/Ptd012-like	412	2nmu	Putative DNA-binding protein
669	YggX-like	413	1xs8	UPF0269 protein yggX
670	Chorismate synthase, AroC	-
671	Tombusvirus P19 core protein, VP19	414	1r9f	Core protein P19
672	Coproporphyrinogen III oxidase	415	1tlb	Coproporphyrinogen III oxidase
673	TolA/TonB C-terminal domain	416	1xx3	TonB protein
674	beta-hairpin-alpha-hairpin repeat	417	1lm5	Subdomain of Desmoplakin Carboxy-Terminal domain (DPCT)
675	Diaminopimelate epimerase-like	418	1s7j	Phenazine biosynthesis protein PhzF family
676	MTH1598-like	419	1jw3	Conserved Hypothetical Protein MTH1598
677	Ribosome binding protein Y (YfiA homologue)	420	1imu	Hypothetical Protein HI0257
678	Chorismate lyase-like	421	2ahc	Chorismate lyase
679	Substrate-binding domain of HMG-CoA reductase	-
680	Penicillin binding protein dimerisation domain	-
681	gp120 core	-
682	C-type lectin-like	-
683	S-adenosylmethionine decarboxylase	-
684	Aldehyde ferredoxin oxidoreductase, N-terminal domain	-
685	4'-phosphopantetheinyl transferase	422	1f7t	Holo-(acyl carrier protein) synthase
686	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	-
687	FAD-binding domain	-
688	Ribosomal protein S5 domain 2-like	423	1xhk	Putative protease La homolog
689	Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	-
690	Regulatory factor Nef	424	2nef	Negative Factor (F-Protein)
691	Periplasmic binding protein-like II	-
692	Ribokinase-like	-
693	S-adenosyl-L-methionine-dependent methyltransferases	-
694	PTS IIb component	425	1ble	Fructose permease
695	P-loop containing nucleoside triphosphate hydrolases	-
696	P-loop containing nucleoside triphosphate hydrolases	-
697	Ribosomal protein L4	-
698	Ribosomal protein L13	-
699	FabD/lysophospholipase-like	-
700	FabD/lysophospholipase-like	426	1oxw	Patatin
701	Peptidyl-tRNA hydrolase II	427	1rlk	Hypothetical protein Ta0108
702	L-sulfolactate dehydrogenase-like	-
703	SurE-like	-
704	Undecaprenyl diphosphate synthase	-
705	Thiamin pyrophosphokinase, catalytic domain	428	1ig0	Thiamin pyrophosphokinase
706	Neurophysin II	-
707	beta-clip	-
708	Barrel-sandwich hybrid	-
709	Double-stranded beta-helix	-
710	Bacteriochlorophyll A protein	-
711	WW domain-like	429	1aiw	Endoglucanase Z
712	Streptavidin-like	430	1oh1	Staphostatin A
713	Elongation factor/aminomethyltransferase common domain	431	1woo	Aminomethyltransferase
714	GroES-like	-
715	ENV polyprotein, receptor-binding domain	-
716	Surface presentation of antigens (SPOA)	-
717	Prokaryotic lipoproteins and lipoprotein localization factors	-
718	PUA domain-like	-
719	C-terminal domain of mollusc hemocyanin	-
720	beta-hairpin stack	-
721	Urease metallochaperone UreE, N-terminal domain	432	1gmu	UreE
722	Immunoglobulin-like beta-sandwich	433	1jju	Quinohemeprotein amine dehydrogenase
723	Immunoglobulin-like beta-sandwich	434	1op4	Neural-cadherin
724	DNA-glycosylase	435	1xqo	8-oxoguanine DNA glycosylase
725	Heme-dependent peroxidases	-
726	Spectrin repeat-like	436	1xwm	Phosphate uptake regulator
727	Spectrin repeat-like	437	1s35	Spectrin beta chain, erythrocyte
728	Apolipophorin-III	438	1eq1	Apolipophorin-III
729	Putative DNA-binding domain	439	1l8r	Dachshund
730	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	440	1s6d	Albumin 8
731	Anaphylotoxins (complement system)	441	1kjs	C5a
732	RuvA C-terminal domain-like	442	1vg5	Rhomboid family protein
733	DNA/RNA-binding 3-helical bundle	-
734	A DNA-binding domain in eukaryotic transcription factors	443	1skn	Skn-1
735	Ectatomin subunits	-
736	Fic-like	444	2g03	Putative Cell Filamentation Protein
737	Four-helical up-and-down bundle	445	1rke	Vinculin
738	EspA/CesA-like	-
739	Long alpha-hairpin	446	1bsh	Epsilon subunit of F1-ATPase
740	GRIP domain	-
741	Flavivirus capsid protein C	-
742	Double Clp-N motif	447	1k6k	ATP-dependent CLP protease
743	BEACH domain	448	1mi1	Neurobeachin
744	beta-catenin-interacting protein ICAT	449	1t08	Beta-catenin/ICAT helical domain/unphosphorylated APC R3
745	Variable surface antigen VlsE	-
746	Telomeric repeat binding factor (TRF) dimerisation domain	-
747	Flagellar transcriptional activator FlhD	-
748	PTS-regulatory domain, PRD	-
749	Frizzled cysteine-rich domain	450	1ijy	Frizzled homolog 8 monomer
750	VHP, Villin headpiece domain	451	1und	Advillin
751	Peridinin-chlorophyll protein	-
752	alpha-alpha superhelix	452	1bc9	Cytohesin-1
753	alpha/alpha toroid	-
754	Uteroglobin-like	453	1utg	Uteroglobin
755	Foot-And-Mouth Disease Virus, subunit 4	-
756	Pyruvoyl-Dependent Histidine Decarboxylas; Chain A	-
757	Oligo-1,6-glucosidase; domain 2	-
758	Tissue inhibitor of metalloproteinase-1. Chain B, domain 1	-
759	Topoisomerase II; domain 5	-
760	Outer-capsid protein sigma 3, small lobe	-
761	putative n-type atp pyrophosphatase, domain 2	-
762	Adenovirus Single-stranded DNA-binding Protein; domain 2	-
763	Outer-capsid protein sigma 3, large lobe	-
764	Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3	-
765	Rossmann fold	-
766	Rossmann fold	-
767	Rossmann fold	-
768	Rossmann fold	454	1dwu	Ribosomal Protein L1
769	Rossmann fold	-
770	Rossmann fold	-
771	D-Maltodextrin-Binding Protein; domain 2	-
772	type ii restriction endonuclease, domain 2	455	1wte	Ecoo109ir type II restriction endonuclease
773	Alpha-Beta Plaits	456	1lfp	Hypothetical protein AQ_1575
774	Fructose-1,6-Bisphosphatase; Chain A, domain 1	457	1vdw	Hypothetical protein PH1897
775	Beta-Lactamase	-
776	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	-
777	Chitosanase; Chain A, domain 2	458	1qgi	Chitosanase
778	Endochitinase; domain 2	-
779	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	-
780	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	-
781	Domain 2, N(10)-formyltetrahydrofolate synthetase	-
782	Dna Ligase; domain 1	-
783	Gyrase A; domain 2	459	1bgw	Topoisomerase
784	Adenosine kinase, small domain	-
785	nicotinate phosphoribosyltransferase	-
786	Nuclear Transport Factor 2; Chain: A,	460	1yge	Domain of lipoxygenase-1
787	Vcp-like ATPase; Chain A, domain 2	461	1o54	SAM-dependent O-methyltransferase
788	Tick-borne Encephalitis virus Glycoprotein; domain 1	-
789	Immunoglobulin-like	462	1m3i	Perfringolysin O
790	Jelly Rolls	-
791	Jelly Rolls	-
792	Elongation Factor Tu (Ef-tu); domain 3	463	1v0f	Endosialidase
793	Lipase, subunit A	464	1eth	Domain of colipase
794	Cysteine Rich Protein	-
795	NADPH-cytochrome p450 Reductase; Chain A, domain 3	-
796	Acyl-CoA Binding Protein	-
797	Methane Monooxygenase Hydroxylase; Chain G, domain 1	-
798	Chitosanase, subunit A; domain 1	-
799	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	465	1su6	Carbon monoxide dehydrogenase 2
800	Helicase, Ruva Protein; domain 3	-
801	Helicase, Ruva Protein; domain 3	466	1g41	Heat shock protein HslU
802	Chloroperoxidase	-
803	Photosynthetic Reaction Center, subunit C; domain 2	-
804	Guanine Nucleotide Dissociation Inhibitor; domain 1	467	1d5t	Guanine nucleotide dissociation inhibitor
805	protoporphyrinogen ix oxidase, domain 3	-
806	borna disease virus nucleoprotein, domain 1	468	1pp1	P40 nucleoprotein
807	Topoisomerase I; domain 4	-
808	Helix Hairpins	-
809	Recoverin; domain 1	-
810	Endonuclease Iii, domain 2	469	1pvs	DNA-3-methyladenine glycosylase II
811	Probable Glutaminase Ybgj; Chain: A, domain 2	-
812	DNA polymerase; domain 1	470	1te2	Putative phosphatase Ynic
813	Penicillin amidase (Acylase) alpha subunit, N-terminal domain	471	1gm7	Penicillin G acylase alpha subunit
814	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A	472	1iuq	Glycerol-3-Phosphate Acyltransferase
815	Lyase 2-enoyl-coa Hydratase; Chain A, domain 2	-
816	Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5	-
817	Arc Repressor Mutant, subunit A	-
818	Arc Repressor Mutant, subunit A	-
819	DnaJ/Hsp40 cysteine-rich domain	-
820	Metallothionein	-
821	Knottins (small inhibitors, toxins, lectins)	-
822	Toxic hairpin	-
823	FwdE/GAPDH domain-like	473	1ygy	D-3-phosphoglycerate dehydrogenase
824	RPB5-like RNA polymerase subunit	474	1dzf	Domain of RNA polymerase (I,II,III) 27 kd polypeptide
825	CYTH-like phosphatases	-
826	LigT-like	475	1iuh	2'-5' RNA Ligase
827	DNA-binding domain of Mlu1-box binding protein MBP1	476	1bm8	Transcription factor MBP1
828	PurS-like	-
829	Muramoyl-pentapeptide Carboxypeptidase; domain 2	-
830	Ta1353-like	477	1rlh	Conserved hypothetical protein from Thermoplasma acidophilum
831	CheC-like	478	1xkr	Chemotaxis Protein CheC
832	Mitochondrial glycoprotein MAM33-like	-
833	Inhibitor of vertebrate lysozyme, Ivy	479	1uuz	Inhibitor of vertebrate lysozyme
834	Mago nashi protein	-
835	Dodecin subunit-like	-
836	Tubby C-terminal domain-like	480	1c8z	Tubby protein
837	PP2C-like	-
838	YggU-like	481	1jrm	Conserved Hypothetical Protein mth637
839	Non-globular alpha+beta subunits of globular proteins	-
840	SRCR-like	482	1by2	Mac-2 binding protein
841	ADP-ribosylation	-
842	Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2	-
843	TBP-like	483	1v5s	MAP/microtubule affinity-regulating kinase 3
844	Ribosomal proteins S24e, L23 and L15e	-
845	Mog1p/PsbP-like	484	1eq6	Mog1p
846	CytB endotoxin-like	485	1cby	Delta-endotoxin CytB
847	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)	486	1j33	CobT
848	Glycerol-3-phosphate (1)-acyltransferase	487	1k30	Glycerol-3-phosphate acyltransferase
849	Cyanovirin-N	488	2ezn	Cyanovirin-N
850	Ribosomal protein L25-like	489	1b75	50S Ribosomal Protein L25
851	PRC-barrel domain	-
852	N-terminal domains of the minor coat protein g3p	-
853	Double-split beta-barrel	-
854	HesB-like domain	490	1nwb	Hypothetical protein AQ_1857
855	Obg-fold	-
856	Calcium-mediated lectin	491	1gzt	Fucose-specific lectin
857	Small protein B (SmpB)	-
858	N-terminal domain of DnaB helicase	492	1b79	DnaB Helicase
859	ERP29 C domain-like	493	1g7d	Endoplasmic reticulum protein Erp29
860	PAH2 domain	494	1g1e	SIN3A Paired Amphipathic Helix 2 Domain
861	DNA/RNA-binding 3-helical bundle	-
862	DNA/RNA-binding 3-helical bundle	495	1j1v	Chromosomal replication initiator protein DnaA
863	Dimerisation interlock	-
864	Open three-helical up-and-down bundle	496	1jw2	Hemolysin expression modulating protein Hha
865	I/LWEQ domain	497	1u89	Talin 1
866	HD-domain/PDEase-like	-
867	Sigma2 domain of RNA polymerase sigma factors	498	1h3l	RNA polymerase sigma factor
868	Myosin phosphatase inhibitor 17kDa protein, CPI-17	499	1j2m	Phosphatase Inhibitor CPI-17
869	C-terminal domain of DFF45/ICAD (DFF-C domain)	-
870	RNase III domain-like	500	1u61	Hypothetical protein BC0111
871	Non-globular all-alpha subunits of globular proteins	-
872	Non-globular all-alpha subunits of globular proteins	-