Target Lists

2009 Consensus Domain Dictionary	List	Images
Top100 Release Target Set Representatives of the top 100 most populated v2009 metafolds
Full Release Target Set Representatives of each of the 807 simulatable v2009 metafolds
2003 Consensus Domain Dictionary	List	Images
Top30 Target Set Representatives within the top30 most populated v2003 metafolds
The 188 Target Set Representatives used in the 2008 Dynameomics publications [1,2,3]
The 253 Target Set Representatives used in the 2009 flexibility paper [4]
Dynameomics SNPs	List	Images
Dynameomics SNPs targets
Search	PDB	Metadata
Search Metafolds
Search Targets

References

1. Beck, DAC, Jonsson AL, Schaeffer RD, Scott KA, Day R, Toofanny RD, Alonso DOV, Daggett V. Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations. Protein Engineering Design & Selection, 21: 353-368, 2008. [ DOI ]
2. Van der Kamp MW, Schaeffer RD, Jonsson AL, Scouras AD, Simms AM, Toofanny RD, Benson NC, Anderson PC, Merkley ED, Rysavy S, Bromley D, Beck DAC, and Daggett V. Dynameomics: A comprehensive database of protein dynamics. Structure, 18: 423-435, 2010. [DOI]
3. Day R, Beck DA, Armen RS, and Daggett V. A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary. Protein Science, 12: 2150-2160, 2003. [DOI]
4. Schaeffer RD, Jonsson A, Simms AM, and Daggett V. Generation of a consensus domain dictionary and fold representative selection. Submitted for Publication, 2010.