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Contact Information
Using the Dynameomics.org website
Citing Dynameomics.org
Team
Sponsors
Contact us at info@dynameomics.org
- Viewing Movies
Movies are formatted as .mpg files and require that you have a viewer such as Windows Media Player or Real Player installed.
- Using the Analysis Tools
In order to use our Analysis Tools in the Target List section of Dynameomics.org, you will need to have a current version of Java running on your local machine. Note that loading java and individual protein structures can be slow.
If you are using our data, please cite the website and the appropriate papers below:
- Beck, D.A.C., Jonsson, A.L., Schaeffer, R.D., Scott, K.A., Day, R., Toofanny, R.D., Alonso, D.O.V., and V. Daggett. Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations. Protein Engineering Design & Selection, 21: 353-368, 2008. [DOI]
- Simms, A.M., Toofanny, R.D., Kehl, C., Benson, N.C., and V. Daggett. Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations. Protein Engineering Design & Selection, 21: 369-377, 2008. [DOI]
- Kehl, C., Simms, A.M., Toofanny, R.D., and Daggett, V., A. Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data. Protein Engineering Design & Selection, 21: 379-386. [DOI]
- Day, R., Beck, D., Armen, R. and V. Daggett, A Consensus View of Fold Space: Combining SCOP, CATH, and the Dali Domain Dictionary, Protein Science, 12, 2150-2160, 2003. [DOI]
Dynameomics.org thanks the following team members for their work on this project:
- Darwin O. V. Alonso
- David A. C. Beck
- Noah Benson
- Ryan Day
- Amanda L. Jonsson
- Catherine Kehl
- Betsy Rolland
- R. Dustin Schaeffer
- Andrew M. Simms
- Kathryn A. Scott
- Rudesh D. Toofanny
We are grateful for financial support in the past from Microsoft Research through the eScience Initiative and more recently through the Technical Computing @ Microsoft Program (http://www.microsoft.com/science). The MD trajectories contained in the data warehouse were produced using resources of the National Energy Research Scientific Computing Center, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231, and Microsoft. In the early phase of this project, seed financial support was provided by the University of Washington's Department of Medical Education and Biomedical Informatics.
Our work is supported by:
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